Author: Hazel Stewart; Katherine Brown; Adam M. Dinan; Nerea Irigoyen; Eric J. Snijder; Andrew E. Firth
Title: The transcriptional and translational landscape of equine torovirus Document date: 2018_4_7
ID: mozfm5ds_14
Snippet: EToV, Berne isolate. A single 27694-nt contig was assembled representing almost the 143 entire viral genome. Only 18 nt at the 5' terminus and 300 nt at the 3' terminus of 144 this contig failed to assemble automatically; however these regions were clearly 145 covered by reads consistent with the reference sequence on inspection and so were 146 added manually to the consensus sequence. Four single nucleotide changes were 147 present in all reads .....
Document: EToV, Berne isolate. A single 27694-nt contig was assembled representing almost the 143 entire viral genome. Only 18 nt at the 5' terminus and 300 nt at the 3' terminus of 144 this contig failed to assemble automatically; however these regions were clearly 145 covered by reads consistent with the reference sequence on inspection and so were 146 added manually to the consensus sequence. Four single nucleotide changes were 147 present in all reads but not the reference sequence compiled from previous 148 sequencing data, at positions 18078 (ORF 1b, C > U), 21429 (ORF S, A > U), 21814 149 (ORF S, C > A) and 25596 (ORF S, C > U). The full-length virus sequence has been 150 deposited in GenBank (Accession MG996765). 151
Search related documents:
Co phrase search for related documents- consensus sequence and entire viral genome: 1
- consensus sequence and reference sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
- consensus sequence and viral genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- consensus sequence and virus sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- entire viral genome and nucleotide change: 1
- entire viral genome and reference sequence: 1
- entire viral genome and single contig: 1
- entire viral genome and viral genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- entire viral genome and virus sequence: 1, 2
- length virus sequence and viral genome: 1, 2
- length virus sequence and virus sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19
- nucleotide change and reference sequence: 1, 2, 3
- nucleotide change and single nucleotide change: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
- nucleotide change and viral genome: 1, 2, 3, 4
- nucleotide change and virus sequence: 1, 2, 3
- reference sequence and viral genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- reference sequence and virus sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20
- single contig and viral genome: 1, 2, 3, 4, 5, 6
- single contig and virus sequence: 1
Co phrase search for related documents, hyperlinks ordered by date