Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank Document date: 2019_11_22
ID: besvz92f_51
Snippet: For VAPiD, a sequence was considered to fail if: no reference matching it was found in the VAPiD database, the sequence was determined to be reverse complemented relative to the selected reference, or one or more "SEQ FEAT" errors was listed in the output errorsummary.val file; all other sequences were considered to pass. Errors observed in our testing are "SEQ FEAT.CdTransFail", "SEQ FEAT.NoStop", "SEQ FEAT.TransLen", "SEQ FEAT.StartCodon", and .....
Document: For VAPiD, a sequence was considered to fail if: no reference matching it was found in the VAPiD database, the sequence was determined to be reverse complemented relative to the selected reference, or one or more "SEQ FEAT" errors was listed in the output errorsummary.val file; all other sequences were considered to pass. Errors observed in our testing are "SEQ FEAT.CdTransFail", "SEQ FEAT.NoStop", "SEQ FEAT.TransLen", "SEQ FEAT.StartCodon", and "SEQ FEAT.InternalStop".
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