Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank Document date: 2019_11_22
ID: besvz92f_56
Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/852657 doi: bioRxiv preprint Test sequences that failed VIGOR In our tests of the NC and NP datasets, VIGOR failed seven total sequences, all seven of which also fail VADR (Table 8) . Of the seven, three had premature stops, two were reverse complemented (one of these is FV536857.1), one had a frameshift and one failed because no s.....
Document: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/852657 doi: bioRxiv preprint Test sequences that failed VIGOR In our tests of the NC and NP datasets, VIGOR failed seven total sequences, all seven of which also fail VADR (Table 8) . Of the seven, three had premature stops, two were reverse complemented (one of these is FV536857.1), one had a frameshift and one failed because no similar reference was found for it. Thus, we conclude that VADR successfully catches all the VIGOR-reported errors that should be caught.
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