Author: D. Molodenskiy; H. Mertens; D. Svergun
Title: An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions Document date: 2019_7_24
ID: lhriiv4u_11
Snippet: The published SAXS data of the tetrameric α-helical membrane channel, Aquaporin0 solubilized by n-Dodecyl β-D-Maltoside (25, 28) was used for the pipeline testing. This sample corresponds to a reliably reconstituted PDC with known geometrical parameters of a detergent corona providing a test case with the modeling program MEMPROT (28) . The model of the Aquaporin0-detergent complex (24, 25, 28) was used as a reference for the models generated b.....
Document: The published SAXS data of the tetrameric α-helical membrane channel, Aquaporin0 solubilized by n-Dodecyl β-D-Maltoside (25, 28) was used for the pipeline testing. This sample corresponds to a reliably reconstituted PDC with known geometrical parameters of a detergent corona providing a test case with the modeling program MEMPROT (28) . The model of the Aquaporin0-detergent complex (24, 25, 28) was used as a reference for the models generated by AMPP. Additional pipeline tests were conducted using the experimental SEC-SAXS data for the mechanosensitive T2 channel solubilized n-Dodecyl β-D-Maltoside (31) downloaded from the SASBDB database (www.sasbdb.org, ID SASDCY6)) (32).
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