Selected article for: "sequence alignment and structural rna"
Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank
  • Document date: 2019_11_22
    • ID: besvz92f_11
    Snippet: VADR's output annotation of each sequence is a fivecolumn feature table conforming to the GenBank feature table syntax rules, and includes all desired features from the RefSeq that could be mapped onto the input sequence via sequence alignment. These features include protein coding regions, the "mature peptide" cleavage products of proteins, genes, noncoding RNAs, and structural RNA features. In the nomenclature of the International Nucleotide Se.....
    Document: VADR's output annotation of each sequence is a fivecolumn feature table conforming to the GenBank feature table syntax rules, and includes all desired features from the RefSeq that could be mapped onto the input sequence via sequence alignment. These features include protein coding regions, the "mature peptide" cleavage products of proteins, genes, noncoding RNAs, and structural RNA features. In the nomenclature of the International Nucleotide Sequence Database Collaboration (INSDC), these are denoted as CDS, mat peptide, gene, ncRNA, and stem loop features, respectively. Submitters rarely annotate RNA features in GenBank virus records even though many viruses have

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