Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank Document date: 2019_11_22
ID: besvz92f_60
Snippet: Definition of false positive and false negative rates for the NC sequences For the NC data set, which was tested with all three packages, we attempted to make plausible definitions of false positives (FPs) and false negatives (FNs), so as to compare the three programs by standard measures in statistics. The sequences that are not from the Norovirus taxon are useful tests for quality control, but are implausible submissions, so we exclude the 5 se.....
Document: Definition of false positive and false negative rates for the NC sequences For the NC data set, which was tested with all three packages, we attempted to make plausible definitions of false positives (FPs) and false negatives (FNs), so as to compare the three programs by standard measures in statistics. The sequences that are not from the Norovirus taxon are useful tests for quality control, but are implausible submissions, so we exclude the 5 sequences that are not classified as Norovirus in Gen-Bank. Additionally, we exclude the 45 sequences in the NC set that VADR determines are truncated on the 5' This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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