Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank Document date: 2019_11_22
ID: besvz92f_22
Snippet: The v-annotate.pl script takes as input a sequence file in FASTA format and the name of an output directory. It uses the models in the default v1.0 VADR model library to analyze and to annotate the input sequences. v-annotate.pl creates output files including a feature table with annotations in the output directory. The workflow of the v-annotate.pl script consists of four stages: classification, coverage determination, alignment-based annotation.....
Document: The v-annotate.pl script takes as input a sequence file in FASTA format and the name of an output directory. It uses the models in the default v1.0 VADR model library to analyze and to annotate the input sequences. v-annotate.pl creates output files including a feature table with annotations in the output directory. The workflow of the v-annotate.pl script consists of four stages: classification, coverage determination, alignment-based annotation and protein validation, each of which is described in more detail below.
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