Author: Han Suh Kang; Katelyn McNair; Daniel A. Cuevas; Barbara A. Bailey; Anca M. Segall; Robert A. Edwards
Title: Prophage genomics reveals patterns in phage genome organization and replication Document date: 2017_3_7
ID: 0abutzb3_20
Snippet: This approach allowed us to identify shared amino acid motifs including the eight-residue motif at the active site of the tyrosine recombinases. One hundred randomly selected integrases were aligned using Clustal Omega (25, 26) and visualized using FigTree (27). To compare the evolution of phage and bacterial proteins, all 24,936 phage Int proteins were aligned in a pair-wise fashion using the Smith-Waterman algorithm and the percent identity bet.....
Document: This approach allowed us to identify shared amino acid motifs including the eight-residue motif at the active site of the tyrosine recombinases. One hundred randomly selected integrases were aligned using Clustal Omega (25, 26) and visualized using FigTree (27). To compare the evolution of phage and bacterial proteins, all 24,936 phage Int proteins were aligned in a pair-wise fashion using the Smith-Waterman algorithm and the percent identity between each pair of proteins was calculated.
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