Author: Eva Dervas; Jussi Hepojoki; Teemu Smura; Barbara Prähauser; Katharina Windbichler; Sandra Blumich; Antonio Ramis; Udo Hetzel; Anja Kipar
Title: Python nidoviruses, more than respiratory pathogens Document date: 2020_4_13
ID: alhfsdu0_1
Snippet: INTRODUCTION 63 respiratory epithelium. These findings and the fact that nidovirus infections affect several python 88 species led us to the hypothesis that python nidoviruses are not restricted to a certain species and 89 have a broad disease potential. Therefore, we undertook a larger study, making use of diagnostic (Table 1 ) as described (6). 168 Library preparation, data analysis, and genome assembly was done as described (6). 169 To study t.....
Document: INTRODUCTION 63 respiratory epithelium. These findings and the fact that nidovirus infections affect several python 88 species led us to the hypothesis that python nidoviruses are not restricted to a certain species and 89 have a broad disease potential. Therefore, we undertook a larger study, making use of diagnostic (Table 1 ) as described (6). 168 Library preparation, data analysis, and genome assembly was done as described (6). 169 To study the frequencies of single nucleotide polymorphisms (SNPs) within samples, the NGS 170 reads were quality filtered using Trimmomatic and the reads with Q-score over 30 were 171 assembled against the consensus sequence of a given sample using the BWA-MEM algorithm 172 (15) followed by removal of potential PCR duplicates using SAMTools version 1.8 (16). The The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.10.036640 doi: bioRxiv preprint
Search related documents:
Co phrase search for related documents- consensus sequence and data analysis: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
- consensus sequence and Library preparation: 1
- data analysis and disease potential: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- data analysis and genome assembly data analysis: 1
- data analysis and give sample: 1
- data analysis and large study: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- data analysis and Library preparation: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
- disease potential and large study: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20
- give sample and large study: 1, 2
Co phrase search for related documents, hyperlinks ordered by date