Author: Maximilian Krause; Adnan M. Niazi; Kornel Labun; Yamila N. Torres Cleuren; Florian S. Müller; Eivind Valen
Title: tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing Document date: 2019_3_25
ID: cq7g8azh_26
Snippet: All alignments discussed in this manuscript, unless mentioned otherwise, were performed using Smith-Waterman local alignments with Biostrings (match score 1; mismatch score -1; gap opening penalty 0; and gap extension penalty 1) [45] . The normalised alignment score was calculated by dividing the local alignment score by the length of the query sequence. If not otherwise mentioned, alignments with a normalised alignment score below 0.6 were disca.....
Document: All alignments discussed in this manuscript, unless mentioned otherwise, were performed using Smith-Waterman local alignments with Biostrings (match score 1; mismatch score -1; gap opening penalty 0; and gap extension penalty 1) [45] . The normalised alignment score was calculated by dividing the local alignment score by the length of the query sequence. If not otherwise mentioned, alignments with a normalised alignment score below 0.6 were discarded as unspecific.
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