Selected article for: "multiple sequence alignment and reference sequence"
Author: Hazel Stewart; Katherine Brown; Adam M. Dinan; Nerea Irigoyen; Eric J. Snijder; Andrew E. Firth
Title: The transcriptional and translational landscape of equine torovirus
  • Document date: 2018_4_7
    • ID: mozfm5ds_82
    Snippet: Berne virus it contains an intact HE gene. Genomes were then mapped to reference 716 sequence coordinates by removing alignment positions that contained a gap 717 character in the reference sequence, and these pairwise alignments were combined 718 to give the multiple sequence alignment. This was analysed with MLOGD using a 40-719 codon sliding window and a 5-codon step size. For each of the three reading frames, 720 within each window the null m.....
    Document: Berne virus it contains an intact HE gene. Genomes were then mapped to reference 716 sequence coordinates by removing alignment positions that contained a gap 717 character in the reference sequence, and these pairwise alignments were combined 718 to give the multiple sequence alignment. This was analysed with MLOGD using a 40-719 codon sliding window and a 5-codon step size. For each of the three reading frames, 720 within each window the null model is that the sequence is non-coding whereas the 721 alternative model is that the sequence is coding in the given reading frame. 722

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