Effectiveness of Containment Measures Against COVID-19 in Singapore: Implications for Other National Containment Efforts

Pung, Rachael; Cook, Alex R.; Chiew, Calvin J.; Clapham, Hannah E.; Sun, Yinxiaohe; Li, Zongbin; Dickens, Borame L.; Ma, Stefan; Mak, Kenneth; Tan, Chorh Chuan; Heng, Derrick; Chen, Mark I-Cheng; Lee, Vernon J.

BACKGROUND: We hypothesize that comprehensive surveillance of COVID-19 in Singapore has facilitated early case detection and prompt contact tracing and, with community-based measures, contained spread. We assessed the effectiveness of containment measures by estimating transmissibility (effective reproduction number, [Image: see text]) over the course of the outbreak. METHODS: We used a Bayesian data augmentation framework to allocate infectors to infectees with no known infectors and determine serial interval distribution parameters via Markov chain Monte Carlo sampling. We fitted a smoothing spline to the number of secondary cases generated by each infector by respective onset dates to estimate [Image: see text] and evaluated increase in mean number of secondary cases per individual for each day’s delay in starting isolation or quarantine. RESULTS: As of April 1, 2020, 1000 COVID-19 cases were reported in Singapore. We estimated a mean serial interval of 4.6 days [95% credible interval (CI) = 4.2, 5.1] with a SD of 3.5 days (95% CI = 3.1, 4.0). The posterior mean [Image: see text] was below one for most of the time, peaking at 1.1 (95% CI = 1.0, 1.3) on week 9 of 2020 due to a spreading event in one of the clusters. Eight hundred twenty-seven (82.7%) of cases infected less than one person on average. Over an interval of 7 days, the incremental mean number of cases generated per individual for each day’s delay in starting isolation or quarantine was 0.03 cases (95% CI = 0.02, 0.05). CONCLUSIONS: We estimate that robust surveillance, active case detection, prompt contact tracing, and quarantine of close contacts kept [Image: see text] below one.