Selected article for: "likelihood tree and nucleotide identity"
Author: C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço
Title: DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics
  • Document date: 2019_5_6
    • ID: 46w17i8r_28
    Snippet: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S4 . Maximum Likelihood inference of the multiple sequence alignment of the 25 DENV-3 complete genomes in the typing dataset. 807 complete DENV-3 genomes were clustered at 98% nucleotide identity and the representative genomes were .....
    Document: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S4 . Maximum Likelihood inference of the multiple sequence alignment of the 25 DENV-3 complete genomes in the typing dataset. 807 complete DENV-3 genomes were clustered at 98% nucleotide identity and the representative genomes were aligned with mafft. A maximum likelihood tree was infered with RAxML. The tree is coloured according to genotype (red: genotype I; green: genotype II; blue: genotype III; purple: genotype IV).

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