Author: Wanda J. Lyon; Zachary K. Smith; Brian Grier; James Baldwin; Clarise R. Starr
Title: Evaluating an Upper Respiratory Disease Panel on the Portable MinION Sequencer Document date: 2018_10_5
ID: 3begdfx2_14
Snippet: Taxonomic identification was used to verified for each data set by using bioinformatics packages Burrows-Wheeler Alignment MEM (BWA; aligned to reference and Human GR2) and SAM Tools was used to extract statistics and error rate per 100 bases [21, 22] . Sequence reads were filtered for any human sequence contributions prior to visualization. Tables 2 and 3 listed the analysis tools used for each data set. Kracken and Bracken bioinformatics packag.....
Document: Taxonomic identification was used to verified for each data set by using bioinformatics packages Burrows-Wheeler Alignment MEM (BWA; aligned to reference and Human GR2) and SAM Tools was used to extract statistics and error rate per 100 bases [21, 22] . Sequence reads were filtered for any human sequence contributions prior to visualization. Tables 2 and 3 listed the analysis tools used for each data set. Kracken and Bracken bioinformatics packages with a k-mer All rights reserved. No reuse allowed without permission.
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