Selected article for: "genome coverage and nanopore sequencing"
Author: Jing Lu; Louis du Plessis; Zhe Liu; Verity Hill; Min Kang; Huifang Lin; Jiufeng Sun; Sarah Francois; Moritz U G Kraemer; Nuno R Faria; John T McCrone; Jinju Peng; Qianling Xiong; Runyu Yuan; Lilian Zeng; Pingping Zhou; Chuming Liang; Lina Yi; Jun Liu; Jianpeng Xiao; Jianxiong Hu; Tao Liu; Wenjun Ma; Wei Li; Juan Su; Huanying Zheng; Bo Peng; Shisong Fang; Wenzhe Su; Kuibiao Li; Ruilin Sun; Ru Bai; Xi Tang; Minfeng Liang; Josh Quick; Tie Song; Andrew Rambaut; Nick Loman; Jayna Raghwani; Oliver Pybus; Changwen Ke
Title: Genomic epidemiology of SARS-CoV-2 in Guangdong Province, China
  • Document date: 2020_4_4
    • ID: ju9japd8_52
    Snippet: The copyright holder for this preprint . https://doi.org/10.1101/2020.04.01.20047076 doi: medRxiv preprint performed using the ARTIC bioinformatic pipeline for COVID-19 with minimap2 (Li, 2018) and medaka (https://github.com/nanoporetech/medaka) for consensus sequence generation. For patient samples that were sequenced using both metagenomics and nanopore sequencing, we retained only the sequence with the highest genome coverage......
    Document: The copyright holder for this preprint . https://doi.org/10.1101/2020.04.01.20047076 doi: medRxiv preprint performed using the ARTIC bioinformatic pipeline for COVID-19 with minimap2 (Li, 2018) and medaka (https://github.com/nanoporetech/medaka) for consensus sequence generation. For patient samples that were sequenced using both metagenomics and nanopore sequencing, we retained only the sequence with the highest genome coverage.

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