Selected article for: "II MHC Class epitope and MHC Class II epitope"
Author: Neha Jain; Uma Shankar; Prativa Majee; Amit Kumar
Title: Scrutinizing the SARS-CoV-2 protein information for the designing an effective vaccine encompassing both the T-cell and B-cell epitopes
  • Document date: 2020_4_1
    • ID: lmstdmyb_21
    Snippet: The MHC class I ad class II molecules were downloaded from RCSB PDB database (https://www.rcsb.org/). Those that were not available were in PDB database were retrieved from pHLA database (https://www.phla3d.com.br/) [42] . The structures of the SARS-CoV-2 proteins were constructed using I-TASSER (https://zhanglab.ccmb.med.umich.edu/I-TASSER/) [43] and HTL and CTL epitopes were mapped and their structures were retrieved using PyMol tool. For the m.....
    Document: The MHC class I ad class II molecules were downloaded from RCSB PDB database (https://www.rcsb.org/). Those that were not available were in PDB database were retrieved from pHLA database (https://www.phla3d.com.br/) [42] . The structures of the SARS-CoV-2 proteins were constructed using I-TASSER (https://zhanglab.ccmb.med.umich.edu/I-TASSER/) [43] and HTL and CTL epitopes were mapped and their structures were retrieved using PyMol tool. For the molecular interaction analysis of the predicted best HLA-epitope pairs for both MHC class I and class II alleles, ClusPro protein-protein docking tool (https://cluspro.org/login.php) [44] was utilized.

    Search related documents:
    Co phrase search for related documents
    • class ii MHC class and HLA epitope pair: 1
    • class ii MHC class and interaction analysis: 1
    • class ii MHC class and MHC class: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • class ii MHC class and protein protein: 1, 2, 3, 4, 5
    • class ii MHC class and SARS protein: 1, 2, 3, 4, 5
    • CTL HTL epitope and HLA epitope: 1
    • CTL HTL epitope and interaction analysis: 1
    • CTL HTL epitope and SARS protein: 1, 2, 3
    • docking tool and interaction analysis: 1, 2
    • docking tool and protein protein: 1, 2, 3, 4, 5, 6
    • docking tool and protein protein docking tool: 1, 2, 3
    • docking tool and PyMol tool: 1
    • docking tool and SARS protein: 1, 2, 3, 4, 5
    • HLA epitope and interaction analysis: 1, 2
    • HLA epitope and MHC class: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
    • HLA epitope and protein protein: 1, 2, 3, 4, 5
    • HLA epitope and SARS protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
    • HLA epitope pair and MHC class: 1
    • HLA epitope pair and protein protein: 1