Selected article for: "GISAID sequence and SARS sequence"
Author: Tamina Park; Sang-Yeop Lee; Seil Kim; Mi Jeong Kim; Hong Gi Kim; Sangmi Jun; Seung Il Kim; Bum Tae Kim; Edmond Changkyun Park; Daeui Park
Title: Spike protein binding prediction with neutralizing antibodies of SARS-CoV-2
  • Document date: 2020_2_27
    • ID: dqxfcwyu_5
    Snippet: To comparing of S gene containing S protein among SARS-CoV-2, SARS-CoV, and MERS-CoV strains, the 90 nucleotide sequences of S gene were retrieved from GISAID [19] and ViPR [20] . The S genes of SARS-CoV-2 91 were retrieved from initially sequenced 62 genomes of SARS-CoV-2 strains. After removal of identical S gene 92 sequences, 16 genes of S protein were used in the study. The sequence from SARS-CoV-2 Wuhan-Hu-1 93 (Genbank MN908947.3 or GISAID .....
    Document: To comparing of S gene containing S protein among SARS-CoV-2, SARS-CoV, and MERS-CoV strains, the 90 nucleotide sequences of S gene were retrieved from GISAID [19] and ViPR [20] . The S genes of SARS-CoV-2 91 were retrieved from initially sequenced 62 genomes of SARS-CoV-2 strains. After removal of identical S gene 92 sequences, 16 genes of S protein were used in the study. The sequence from SARS-CoV-2 Wuhan-Hu-1 93 (Genbank MN908947.3 or GISAID EPI ISL 402125) was used as a representative sequence of SARS-CoV-2 94 strains throughout this study. The closely related strains of SARS-CoV-2 were selected from preliminary and 95 extensive phylogenetic analaysis of SARS-CoV related strains including btSARS-CoV, SARS-CoV and a 96 MERS-CoV strain. More detail information of the sequences used in this study were listed in Supplementary 97 author/funder. All rights reserved. No reuse allowed without permission.

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