Author: Oude Munnink, Bas B.; Jazaeri Farsani, Seyed Mohammad; Deijs, Martin; Jonkers, Jiri; Verhoeven, Joost T. P.; Ieven, Margareta; Goossens, Herman; de Jong, Menno D.; Berkhout, Ben; Loens, Katherine; Kellam, Paul; Bakker, Margreet; Canuti, Marta; Cotten, Matthew; van der Hoek, Lia
Title: Autologous Antibody Capture to Enrich Immunogenic Viruses for Viral Discovery Document date: 2013_11_4
ID: 0mu4tkui_15
Snippet: Primers, MIDs and ribosomal RNA sequences were trimmed from the reads. Sequences were compared with all available sequences in the nonredundant Genbank database [16] via the BlastN (http://blast.ncbI.nlm.nih.gov/Blast.cgi) tool [17] . The following Blast settings were used: expect threshold: 1000, Match/ Mismatch Scores: 1.-1, Gap Costs: Existence: 2 Extension: 1. The blast output was subsequently used to create a taxonomic.....
Document: Primers, MIDs and ribosomal RNA sequences were trimmed from the reads. Sequences were compared with all available sequences in the nonredundant Genbank database [16] via the BlastN (http://blast.ncbI.nlm.nih.gov/Blast.cgi) tool [17] . The following Blast settings were used: expect threshold: 1000, Match/ Mismatch Scores: 1.-1, Gap Costs: Existence: 2 Extension: 1. The blast output was subsequently used to create a taxonomic
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