Selected article for: "alignment editor and sequence alignment"
Author: Van Nguyen, Dung; Van Nguyen, Cuong; Bonsall, David; Ngo, Tue Tri; Carrique-Mas, Juan; Pham, Anh Hong; Bryant, Juliet E.; Thwaites, Guy; Baker, Stephen; Woolhouse, Mark; Simmonds, Peter
Title: Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam
  • Document date: 2018_2_28
    • ID: 0jtfc271_22
    Snippet: Sequences were imported into SSE (Simmonic Sequence Editor) [31] for the alignment and calculation of sequence distance values from reference sequences of known viruses from which sequence identities were inferred. Sequence distances instead of sequence identities in the regions used for classification of hepaciviruses and pegiviruses were presented to easily compare with the species p-distance thresholds set in the proposed update to the taxonom.....
    Document: Sequences were imported into SSE (Simmonic Sequence Editor) [31] for the alignment and calculation of sequence distance values from reference sequences of known viruses from which sequence identities were inferred. Sequence distances instead of sequence identities in the regions used for classification of hepaciviruses and pegiviruses were presented to easily compare with the species p-distance thresholds set in the proposed update to the taxonomy of the genera Hepacivirus and Pegivirus [32] . Maximum-likelihood phylogenetic trees were reconstructed using the MEGA 7.0 software package [33] with 1000 bootstrap resamples. The best-fitting model for each sequence dataset (as shown in figure captions) was first determined and used for phylogenetic reconstruction. Sequences obtained in this study have been assigned the following GenBank accession numbers MG600410-MG600465.

    Search related documents:
    Co phrase search for related documents
    • phylogenetic reconstruction and sequence identity: 1
    • phylogenetic reconstruction and software package: 1
    • phylogenetic tree and reference sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23
    • phylogenetic tree and sequence distance: 1, 2, 3, 4, 5, 6, 7, 8
    • phylogenetic tree and sequence identity: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20
    • phylogenetic tree and software package: 1, 2
    • reference sequence and sequence distance: 1
    • reference sequence and sequence identity: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28
    • reference sequence and software package: 1
    • sequence identity and software package: 1, 2, 3, 4
    • software package and study obtain: 1