Author: Chernobrovkin, Alexey L.; Zubarev, Roman A.
Title: Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins Document date: 2014_3_11
ID: 0hrwqho8_36
Snippet: Given that our procedure is easy and uses standard proteomics software tools, there is no valid excuse left for not using the described method of detection (or similar) when proteomics data are available. Figure S1 Histograms and density plots of Scores, Delta Scores and normalized Delta Scores (Delta Score divided by Score) for viral peptides identified in proteomes of eleven cell lines by Andromeda search engine at 1% FDR threshold by matching .....
Document: Given that our procedure is easy and uses standard proteomics software tools, there is no valid excuse left for not using the described method of detection (or similar) when proteomics data are available. Figure S1 Histograms and density plots of Scores, Delta Scores and normalized Delta Scores (Delta Score divided by Score) for viral peptides identified in proteomes of eleven cell lines by Andromeda search engine at 1% FDR threshold by matching MS/MS spectra against concatenated human-viral sequence database. Abbreviations: HAdvC -human adenovirus C identified in HEK293 cell line, XMRV -xenotropic murine leukemia virusrelated virus identified in LNCaP cell line, Other -other peptidespectral matches from eleven cell lines uniquely attributed to viral peptides. (PDF)
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