Selected article for: "genome coverage and virus genome"

Author: Ping Liu; Jing-Zhe Jiang; Xiu-Feng Wan; Yan Hua; Xiaohu Wang; Fanghui Hou; Jing Chen; Jiejian Zou; Jinping Chen
Title: Are pangolins the intermediate host of the 2019 novel coronavirus (2019-nCoV) ?
  • Document date: 2020_2_20
  • ID: 2inlyd0t_31
    Snippet: Genomic assembly and sequence analyses. After examining the high similarity among the samples from three animals, to maximize the coverage of the virus genome, clean reads from three animals were pooled together and de novo assembled using MEGAHIT v1. 2.9 [19] . The assembled contigs were used as references for mapping those the rest unmapped reads using Salmon v0.14. 1 [20] , and multiple rounds were implemented to maximize the mapping (Table S2.....
    Document: Genomic assembly and sequence analyses. After examining the high similarity among the samples from three animals, to maximize the coverage of the virus genome, clean reads from three animals were pooled together and de novo assembled using MEGAHIT v1. 2.9 [19] . The assembled contigs were used as references for mapping those the rest unmapped reads using Salmon v0.14. 1 [20] , and multiple rounds were implemented to maximize the mapping (Table S2) .

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