Do Viruses Exchange Genes across Superkingdoms of Life?

Malik, Shahana S.; Azem-e-Zahra, Syeda; Kim, Kyung Mo; Caetano-Anollés, Gustavo; Nasir, Arshan

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb. 2017.02110/full#supplementary-material Table S1 | List of viruses analyzed in this study. Also listed are virus replicon type, virus host, and known family/order. Table S2 | FSFs detected in archaeoviruses. FSFs are identified both by SCOP numeric IDs and alpha-numeric concise classification strings (ccs). The f-values are also listed for Archaea, Bacteria, and Eukarya. FSFs shared exclusively with non-host superkingdoms are highlighted. Table S3 | FSFs detected in bacterioviruses. FSFs are identified both by SCOP numeric IDs and alpha-numeric concise classification strings (ccs). The f-values are also listed for Archaea, Bacteria, and Eukarya. FSFs shared exclusively with non-host superkingdoms are highlighted. Table S4 | FSFs detected in eukaryoviruses. FSFs are identified both by SCOP numeric IDs and alpha-numeric concise classification strings (ccs). The f-values are also listed for Archaea, Bacteria, and Eukarya. FSFs shared exclusively with non-host superkingdoms are highlighted. Table S5 | The composition of BE Venn group in bacterioviruses and eukaryoviruses. FSFs are identified both by SCOP numeric IDs and alpha-numeric concise classification strings (ccs). The f-values are listed for Bacteria, and Eukarya. The difference in f-values was calculated by subtracting f-value of an FSF in Bacteria from the corresponding f-value for that FSF in Eukarya. FSFs with an f-value difference of over 25% are highlighted (yellow when f-value in Eukarya exceeds that of in Bacteria and blue for vice versa). Data sorted in an increasing manner for FSFs common to both bacterioviruses and eukaryoviruses, unique to bacterioviruses, and unique to eukaryoviruses.