Author: Franzo, Giovanni; Cecchinato, Mattia; Tosi, Giovanni; Fiorentini, Laura; Faccin, Francesca; Tucciarone, Claudia Maria; Trogu, Tiziana; Barbieri, Ilaria; Massi, Paola; Moreno, Ana
Title: GI-16 lineage (624/I or Q1), there and back again: The history of one of the major threats for poultry farming of our era Document date: 2018_12_20
ID: 0pi042qi_9
Snippet: Hypervariable region 1-2 (HVR12). Unfortunately, no strict guidelines currently exist on IBV sequencing protocols. Consequently, despite the HVR3 of the S1 gene is the most widely sequenced region, different research groups have produced and published sequences obtained from other Spike protein portions. To benefit from these sequences, some representative of additional countries, a second dataset based on the HVR1 and 2 (HVR12) was created and a.....
Document: Hypervariable region 1-2 (HVR12). Unfortunately, no strict guidelines currently exist on IBV sequencing protocols. Consequently, despite the HVR3 of the S1 gene is the most widely sequenced region, different research groups have produced and published sequences obtained from other Spike protein portions. To benefit from these sequences, some representative of additional countries, a second dataset based on the HVR1 and 2 (HVR12) was created and analyzed using the same approach previously described. However, because of the limited sequence number and more balanced origin, a unique analysis was performed, avoiding the multiple dataset generation step.
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