Author: Tcherepanov, Vasily; Ehlers, Angelika; Upton, Chris
Title: Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome Document date: 2006_6_13
ID: 1e2kkhht_8
Snippet: GATU consists of two distinct components. The first is a Java Swing-based GUI that allows the user to select the reference and target genomes, initiate automatic transfer of annotations, view and evaluate the results, and finally select the ORFs to be annotated. The second is an application server, which runs programs such as BLAST [5] , NEE-DLE [6, 7] , and CLUSTALW [8] on a remote server and then returns the results to the client machine. The u.....
Document: GATU consists of two distinct components. The first is a Java Swing-based GUI that allows the user to select the reference and target genomes, initiate automatic transfer of annotations, view and evaluate the results, and finally select the ORFs to be annotated. The second is an application server, which runs programs such as BLAST [5] , NEE-DLE [6, 7] , and CLUSTALW [8] on a remote server and then returns the results to the client machine. The user may choose not to use our application server and run BLAST, NEEDLE and CLUSTALW on the local machine if the appropriate programs are installed on that machine. The complete instructions on how to do that are available from our documentation page.
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