Selected article for: "genetic distance and phylogenetic tree"
Author: Franzo, Giovanni; Cecchinato, Mattia; Tosi, Giovanni; Fiorentini, Laura; Faccin, Francesca; Tucciarone, Claudia Maria; Trogu, Tiziana; Barbieri, Ilaria; Massi, Paola; Moreno, Ana
Title: GI-16 lineage (624/I or Q1), there and back again: The history of one of the major threats for poultry farming of our era
  • Document date: 2018_12_20
    • ID: 0pi042qi_4
    Snippet: A phylogenetic tree was then reconstructed using PhyML [27] selecting as the most appropriate substitution model the one with the lowest Akaike Information Criterion (AIC) calculated using Jmodeltest [28] . The phylogenetic tree was used to classify the strains and those potentially belonging to the GI-16 lineage were extracted. Particularly, a clear clustering with reference strains (branch support equal or higher than 0.98 SH-like test support .....
    Document: A phylogenetic tree was then reconstructed using PhyML [27] selecting as the most appropriate substitution model the one with the lowest Akaike Information Criterion (AIC) calculated using Jmodeltest [28] . The phylogenetic tree was used to classify the strains and those potentially belonging to the GI-16 lineage were extracted. Particularly, a clear clustering with reference strains (branch support equal or higher than 0.98 SH-like test support values) and genetic distance lower than 13% were considered as satisfactory criteria for lineage assignment [6] .

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