Selected article for: "clade credibility and MCC tree"
Author: de Silva, Eric; Ferguson, Neil M.; Fraser, Christophe
Title: Inferring pandemic growth rates from sequence data
  • Document date: 2012_8_7
    • ID: 1piyoafd_31
    Snippet: Each BEAST run is repeated at least twice so as to independently confirm convergence. The package TRACER is also used to plot the BSP and lineages-through-time (LTT) plots. The package 'FIGTREE' (http://tree.bio. ed.ac.uk/software/figtree/) is used to plot the maximum clade credibility (MCC) tree, defined as the tree with the highest sum of posterior probabilities of the internal nodes......
    Document: Each BEAST run is repeated at least twice so as to independently confirm convergence. The package TRACER is also used to plot the BSP and lineages-through-time (LTT) plots. The package 'FIGTREE' (http://tree.bio. ed.ac.uk/software/figtree/) is used to plot the maximum clade credibility (MCC) tree, defined as the tree with the highest sum of posterior probabilities of the internal nodes.

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