Selected article for: "effective population size and skyline plot"
Author: de Silva, Eric; Ferguson, Neil M.; Fraser, Christophe
Title: Inferring pandemic growth rates from sequence data
  • Document date: 2012_8_7
    • ID: 1piyoafd_4
    Snippet: The classical skyline plot [5] (see also the electronic supplementary material) allows a non-parametric estimation of the past effective population size to be made. The generalized skyline plot [6] reduces the noise and stochasticity found in classical skyline plots by grouping coalescent events over which changes in effective population size are estimated. Each interval will therefore have a number of coalescent events as well as sampling events.....
    Document: The classical skyline plot [5] (see also the electronic supplementary material) allows a non-parametric estimation of the past effective population size to be made. The generalized skyline plot [6] reduces the noise and stochasticity found in classical skyline plots by grouping coalescent events over which changes in effective population size are estimated. Each interval will therefore have a number of coalescent events as well as sampling events (points in time at which sequences are collected).

    Search related documents:
    Co phrase search for related documents
    • coalescent event and effective population size change: 1
    • coalescent event and electronic supplementary material: 1
    • coalescent event and generalized skyline plot: 1
    • coalescent event and population size: 1, 2, 3, 4, 5
    • coalescent event and sampling event: 1, 2
    • coalescent event and skyline plot: 1, 2
    • coalescent event and supplementary material: 1
    • effective population size and electronic supplementary material: 1, 2, 3
    • effective population size and generalized skyline plot: 1, 2
    • effective population size and non parametric estimation: 1
    • effective population size and population size: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69
    • effective population size and sampling event: 1, 2
    • effective population size and skyline plot: 1, 2, 3, 4, 5, 6
    • effective population size and supplementary material: 1, 2, 3
    • effective population size change and population size: 1
    • effective population size change and sampling event: 1
    • electronic supplementary material and population size: 1, 2, 3, 4, 5, 6, 7
    • electronic supplementary material and skyline plot: 1, 2
    • electronic supplementary material and stochasticity noise: 1