Author: Gao, James ZM; Li, Linda YM; Reidys, Christian M
Title: Inverse folding of RNA pseudoknot structures Document date: 2010_6_23
ID: 1lojd0xa_81
Snippet: An interesting class are the 3-noncrossing nonplanar pseudoknot structures. A nonplanar pseudoknot structure is a 3-noncrossing structure which is not a bi-secondary structure in the sense of Stadler [30] . That is, it cannot be represented by noncrossing arcs using the upper and lower half planes. Since DP-folding paradigms of pseudoknots folding are based on gap-matrices [15] , the minimal class of "missed" structures (given the implemented tru.....
Document: An interesting class are the 3-noncrossing nonplanar pseudoknot structures. A nonplanar pseudoknot structure is a 3-noncrossing structure which is not a bi-secondary structure in the sense of Stadler [30] . That is, it cannot be represented by noncrossing arcs using the upper and lower half planes. Since DP-folding paradigms of pseudoknots folding are based on gap-matrices [15] , the minimal class of "missed" structures (given the implemented truncations) are exactly these, nonplanar, 3-noncrossing structures. In Figure 26 we showcase a nonplanar RNA pseudoknot structure and 3 sequences of its neutral network, generated by Inv.
Search related documents:
Co phrase search for related documents- Inv generate and pseudoknot structure: 1
Co phrase search for related documents, hyperlinks ordered by date