Author: Brandon Malone; Boris Simovski; Clement Moline; Jun Cheng; Marius Gheorghe; Hugues Fontenelle; Ioannis Vardaxis; Simen Tennoe; Jenny-Ann Malmberg; Richard Stratford; Trevor Clancy
Title: Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2: toward universal blueprints for vaccine designs Document date: 2020_4_21
ID: cm30gyd8_64
Snippet: To sample from the null model, each of the k HLA tracks is divided in segments and gaps, which are then shuffled to produce a randomized HLA track. This is repeated 10000 times, to produce 10000 samples of Si statistic for each bin. For each bin, the p-value is estimated as the proportion of the samples that are equal or larger then the truly observed enrichment. Further, the generated p-values are adjusted for multiple testing with the Benjamini.....
Document: To sample from the null model, each of the k HLA tracks is divided in segments and gaps, which are then shuffled to produce a randomized HLA track. This is repeated 10000 times, to produce 10000 samples of Si statistic for each bin. For each bin, the p-value is estimated as the proportion of the samples that are equal or larger then the truly observed enrichment. Further, the generated p-values are adjusted for multiple testing with the Benjamini-Yekutieli procedure to control for a false discovery rate (FDR) of 0.05.
Search related documents:
Co phrase search for related documents- Benjamini Yekutieli procedure and false discovery rate: 1
- Benjamini Yekutieli procedure and FDR false discovery rate: 1
- bin Si statistic and HLA track: 1
- bin Si statistic and Si statistic: 1
- discovery rate and false discovery rate: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80
- discovery rate and FDR false discovery rate: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70
- discovery rate and FDR false discovery rate control: 1, 2, 3, 4
- discovery rate and multiple testing: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27
- false discovery rate and FDR false discovery rate: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70
- false discovery rate and FDR false discovery rate control: 1, 2, 3, 4
- false discovery rate and multiple testing: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27
- FDR false discovery rate and multiple testing: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
- FDR false discovery rate control and multiple testing: 1
Co phrase search for related documents, hyperlinks ordered by date