Author: Palmer, Duncan S.; Turner, Isaac; Fidler, Sarah; Frater, John; Goedhals, Dominique; Goulder, Philip; Huang, Kuan-Hsiang Gary; Oxenius, Annette; Phillips, Rodney; Shapiro, Roger; Vuuren, Cloete van; McLean, Angela R.; McVean, Gil
Title: Mapping the drivers of within-host pathogen evolution using massive data sets Document date: 2019_7_9
ID: 100r7w2n_41
Snippet: where ν i is the recombination rate between sites i − 1 and i, and k is the number of sequences. We allow moves to alter the recombination rate in the same way as the selection parameters, ω i . A new value ν is chosen such that ν = ν exp(U ), where U ∼ Uniform(−1, 1). We have an exponential prior for ν with rate parameter λ ν . The acceptance probability is identical to that of the selection parameters, with ω i and λ ω replaced.....
Document: where ν i is the recombination rate between sites i − 1 and i, and k is the number of sequences. We allow moves to alter the recombination rate in the same way as the selection parameters, ω i . A new value ν is chosen such that ν = ν exp(U ), where U ∼ Uniform(−1, 1). We have an exponential prior for ν with rate parameter λ ν . The acceptance probability is identical to that of the selection parameters, with ω i and λ ω replaced with ν i and λ ν respectively.
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