Author: Palmer, Duncan S.; Turner, Isaac; Fidler, Sarah; Frater, John; Goedhals, Dominique; Goulder, Philip; Huang, Kuan-Hsiang Gary; Oxenius, Annette; Phillips, Rodney; Shapiro, Roger; Vuuren, Cloete van; McLean, Angela R.; McVean, Gil
Title: Mapping the drivers of within-host pathogen evolution using massive data sets Document date: 2019_7_9
ID: 100r7w2n_40
Snippet: Recombination Probabilities r i . Assuming independence between sites, and a distinct recombination rate at each site, we must vary r i for i ∈ {2, 3, . . . , m}, where m is the number of codon sites in the sequence. We do this by perturbing the recombination rate at a given site in exactly the same way as for the selection parameters (ω i ) through a shift on the log scale. The recombination rate is related to the probability of recombination.....
Document: Recombination Probabilities r i . Assuming independence between sites, and a distinct recombination rate at each site, we must vary r i for i ∈ {2, 3, . . . , m}, where m is the number of codon sites in the sequence. We do this by perturbing the recombination rate at a given site in exactly the same way as for the selection parameters (ω i ) through a shift on the log scale. The recombination rate is related to the probability of recombination through the relation
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