Selected article for: "best fit substitution model and likelihood analysis"
Author: Lau, Susanna K. P.; Wong, Antonio C. P.; Lau, Terrence C. K.; Woo, Patrick C. Y.
Title: Molecular Evolution of MERS Coronavirus: Dromedaries as a Recent Intermediate Host or Long-Time Animal Reservoir?
  • Document date: 2017_10_16
    • ID: 1sq2uvur_38
    Snippet: The 219 MERS-CoV genomes were aligned by multiple alignments using fast fourier transform. Maximum-likelihood phylogenetic trees with 1000 bootstrap replicates were constructed using PhyML v3.0 (The French Institute of Bioinformatics & France Genomique, Montpellier, France) on the basis of their complete genomes as well as ORF1ab and S genes. The best-fit substitution model was selected using PhyML with Smart Model Selection and used in the maxim.....
    Document: The 219 MERS-CoV genomes were aligned by multiple alignments using fast fourier transform. Maximum-likelihood phylogenetic trees with 1000 bootstrap replicates were constructed using PhyML v3.0 (The French Institute of Bioinformatics & France Genomique, Montpellier, France) on the basis of their complete genomes as well as ORF1ab and S genes. The best-fit substitution model was selected using PhyML with Smart Model Selection and used in the maximum-likelihood analysis.

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