Author: Wilkins, Jordan; Zheng, Yi-Min; Yu, Jingyou; Liang, Chen; Liu, Shan-Lu
Title: Nonhuman Primate IFITM Proteins Are Potent Inhibitors of HIV and SIV Document date: 2016_6_3
ID: 1m1woscb_25
Snippet: For this study, 14 new nonhuman primate IFITM sequences were used (see under Cloning and DNA Sequencing), among which 13 are unique sequences (6 IFITM1 and 7 IFITM3) at the nucleotide level and 11 are unique sequences (4 IFITM1 and 7 IFITM3) at the amino acid level. A total of 18 nucleotide sequences were used for IFITM analysis within Datamonkey online interface (http://www.datamonkey.org/dataupload.php) and MEGA6 software [44] . Sequences were .....
Document: For this study, 14 new nonhuman primate IFITM sequences were used (see under Cloning and DNA Sequencing), among which 13 are unique sequences (6 IFITM1 and 7 IFITM3) at the nucleotide level and 11 are unique sequences (4 IFITM1 and 7 IFITM3) at the amino acid level. A total of 18 nucleotide sequences were used for IFITM analysis within Datamonkey online interface (http://www.datamonkey.org/dataupload.php) and MEGA6 software [44] . Sequences were aligned using ClustalW and a phylogeny of IFITM was constructed by the Neighbor-joining method [45, 46] . Evolutionary distances were estimated using the Jukes Cantor method [47] . Confidence levels were determined using the bootstrap method with 1000 replicates and selection was determined using the Nei-Gojobori method [48] .
Search related documents:
Co phrase search for related documents- amino acid and confidence level: 1, 2
- amino acid and evolutionary distance: 1, 2, 3, 4
- amino acid and IFITM analysis: 1
- amino acid and IFITM phylogeny: 1
- amino acid and IFITM sequence: 1, 2
- amino acid and Nei gojobori method: 1
- amino acid and Neighbor join: 1
- amino acid and nucleotide level: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54
- amino acid and nucleotide sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78
- amino acid and unique sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31
- amino acid level and bootstrap method: 1
- amino acid level and evolutionary distance: 1, 2
- amino acid level and nucleotide level: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31
- amino acid level and nucleotide sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
- bootstrap method and confidence level: 1
- bootstrap method and nucleotide sequence: 1, 2
- Cantor method and Nei gojobori method: 1
- confidence level and nucleotide level: 1, 2
- evolutionary distance and nucleotide sequence: 1
Co phrase search for related documents, hyperlinks ordered by date