Author: Jiao Chen; Jiayu Shang; Jianrong Wang; Yanni Sun
Title: A binning tool to reconstruct viral haplotypes from assembled contigs Document date: 2019_7_16
ID: 2basllfv_21
Snippet: In the implementation, we first sort all the windows in descending order of window length. Then we choose the most frequent window depth of the top X windows as the number of haplotypes. The default value of X is 50 in our implementation. We will present the results of haplotype number estimation using consensus window depth for both simulated and real quasispecies data......
Document: In the implementation, we first sort all the windows in descending order of window length. Then we choose the most frequent window depth of the top X windows as the number of haplotypes. The default value of X is 50 in our implementation. We will present the results of haplotype number estimation using consensus window depth for both simulated and real quasispecies data.
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