Author: Alguwaizani, Saud; Park, Byungkyu; Zhou, Xiang; Huang, De-Shuang; Han, Kyungsook
Title: Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids Document date: 2018_5_9
ID: 0dxrai3j_7
Snippet: Feature F2 is defined by (2) . It appears to be similar to F1, but there are two differences: (1) for F2, the sum of squared length of SARs is computed for every window of size 6 instead of a whole protein sequence, and (2) the maximum of the sum of squared length of SARs in a window is selected for F2. For example, a protein sequence SWWWWRSSSRRRRRRSSSWW has 15 possible windows of size 6, as shown in Figure 2 . For each amino acid, we compute it.....
Document: Feature F2 is defined by (2) . It appears to be similar to F1, but there are two differences: (1) for F2, the sum of squared length of SARs is computed for every window of size 6 instead of a whole protein sequence, and (2) the maximum of the sum of squared length of SARs in a window is selected for F2. For example, a protein sequence SWWWWRSSSRRRRRRSSSWW has 15 possible windows of size 6, as shown in Figure 2 . For each amino acid, we compute its F2 score by selecting the maximum of the sum of squared length of the SAR in a window of size 6:
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