Author: Nunes, Márcio Roberto Teixeira; de Souza, William Marciel; Acrani, Gustavo Olszanski; Cardoso, Jedson Ferreira; da Silva, Sandro Patroca; Badra, Soraya Jabur; Figueiredo, Luiz Tadeu Moraes; Vasconcelos, Pedro Fernando da Costa
Title: Revalidation and genetic characterization of new members of Group C (Orthobunyavirus genus, Peribunyaviridae family) isolated in the Americas Document date: 2018_5_24
ID: 17f1evh3_10
Snippet: Virus genomes were evaluated regarding it sizes, annotations of putative open reading frame (ORF), 5' and 3' non-coding regions (NCRs) and conserved motifs with Geneious 9.1.2 (Biomatters, New Zealand), for identification of transmembrane regions and signal peptide we used the TOPCONS web server [13] and for identification of N-glycosylation sites we used NetNglyc 1.0 Server (http://www.cbs.dtu.dk/services/NetNGlyc/). The annotations of protein d.....
Document: Virus genomes were evaluated regarding it sizes, annotations of putative open reading frame (ORF), 5' and 3' non-coding regions (NCRs) and conserved motifs with Geneious 9.1.2 (Biomatters, New Zealand), for identification of transmembrane regions and signal peptide we used the TOPCONS web server [13] and for identification of N-glycosylation sites we used NetNglyc 1.0 Server (http://www.cbs.dtu.dk/services/NetNGlyc/). The annotations of protein domains were performed with InterPro 60.0 [14] . The presence of potential characteristic motifs for orthobunyaviruses were identified on multiple sequence alignments (MSA) based on amino acids sequences, which were carried out using Muscle v.3.7 [15] , and visualized in Geneious 9.1.2 (Biomatters, New Zealand).
Search related documents:
Co phrase search for related documents- acid sequence and MSA multiple sequence alignment: 1, 2, 3
- acid sequence and multiple sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22
- acid sequence and non coding region: 1, 2, 3, 4
- acid sequence and open reading frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- acid sequence and ORF open reading frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- acid sequence and protein domain: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid sequence and MSA multiple sequence alignment: 1, 2, 3
- amino acid sequence and multiple sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22
- amino acid sequence and non coding region: 1, 2, 3, 4, 5
- amino acid sequence and open reading frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid sequence and ORF open reading frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid sequence and protein domain: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- characteristic motif and multiple sequence alignment: 1
- characteristic motif and open reading frame: 1
- MSA multiple sequence alignment and multiple sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- MSA multiple sequence alignment and open reading frame: 1
- MSA multiple sequence alignment and ORF open reading frame: 1
- multiple sequence alignment and ORF open reading frame: 1, 2, 3
- multiple sequence alignment and protein domain: 1, 2, 3, 4, 5, 6, 7, 8
Co phrase search for related documents, hyperlinks ordered by date