Author: Zhao, Huabin; Ru, Binghua; Teeling, Emma C.; Faulkes, Christopher G.; Zhang, Shuyi; Rossiter, Stephen J.
Title: Rhodopsin Molecular Evolution in Mammals Inhabiting Low Light Environments Document date: 2009_12_16
ID: 02uqygfs_48
Snippet: To test for a significant difference between the published species tree and our gene tree [34, 35] , we undertook Shimodaria-Hasgawa (SH) tests [61] in PAUP* 4.10b, with full optimization (two-tailed) and RELL bootstrap (one-tailed), respectively. These tests were calculated with 1,000 bootstrap replicates. We then repeated this test separately comparing the published species tree with gene tree in which we either (a) constrained the clade Rodent.....
Document: To test for a significant difference between the published species tree and our gene tree [34, 35] , we undertook Shimodaria-Hasgawa (SH) tests [61] in PAUP* 4.10b, with full optimization (two-tailed) and RELL bootstrap (one-tailed), respectively. These tests were calculated with 1,000 bootstrap replicates. We then repeated this test separately comparing the published species tree with gene tree in which we either (a) constrained the clade Rodentia or (b) constrained the clade Chiroptera (bats).
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