Author: Tchitchek, Nicolas; Eisfeld, Amie J; Tisoncik-Go, Jennifer; Josset, Laurence; Gralinski, Lisa E; Bécavin, Christophe; Tilton, Susan C; Webb-Robertson, Bobbie-Jo; Ferris, Martin T; Totura, Allison L; Li, Chengjun; Neumann, Gabriele; Metz, Thomas O; Smith, Richard D; Waters, Katrina M; Baric, Ralph; Kawaoka, Yoshihiro; Katze, Michael G
Title: Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice Document date: 2013_7_29
ID: 1qc72ovc_64
Snippet: Capillary LC-MS/MS analysis was used to generate a peptide accurate mass and time (AMT) tag database [54] for virus-infected lung homogenates (see below). For this, dried peptide fractions were reconstituted in 30 μL of 25 mM ammonium bicarbonate, pH 7.8, and analyzed using a 4-column custom-built capillary LC system coupled online to a linear ion trap mass spectrometer (LTQ; Thermo Scientific, San Jose, CA) by way of an inhouse manufactured nan.....
Document: Capillary LC-MS/MS analysis was used to generate a peptide accurate mass and time (AMT) tag database [54] for virus-infected lung homogenates (see below). For this, dried peptide fractions were reconstituted in 30 μL of 25 mM ammonium bicarbonate, pH 7.8, and analyzed using a 4-column custom-built capillary LC system coupled online to a linear ion trap mass spectrometer (LTQ; Thermo Scientific, San Jose, CA) by way of an inhouse manufactured nanoelectrospray ionization interface, as previously described [55] . To identify the eluting peptides, the LTQ stage was operated in a data-dependent MS/MS mode as previously described [53] .
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