Selected article for: "maximum likelihood and ML maximum likelihood"
Author: Antunes, Agostinho; Troyer, Jennifer L.; Roelke, Melody E.; Pecon-Slattery, Jill; Packer, Craig; Winterbach, Christiaan; Winterbach, Hanlie; Hemson, Graham; Frank, Laurence; Stander, Philip; Siefert, Ludwig; Driciru, Margaret; Funston, Paul J.; Alexander, Kathy A.; Prager, Katherine C.; Mills, Gus; Wildt, David; Bush, Mitch; O'Brien, Stephen J.; Johnson, Warren E.
Title: The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics
  • Document date: 2008_11_7
    • ID: 095u8eaj_46
    Snippet: Phylogenetic relationships among mtDNA and FIV Ple pol-RT sequences were assessed using Minimum evolution (ME), Maximum parsimony (MP), and Maximum likelihood (ML) approaches implemented in PAUP [78] . The ME analysis for mtDNA consisted of NJ trees constructed from Kimura two-parameter distances followed by a branch-swapping procedure and for FIV Ple data employed the same parameter estimates as were used in the ML analysis. The MP analysis was .....
    Document: Phylogenetic relationships among mtDNA and FIV Ple pol-RT sequences were assessed using Minimum evolution (ME), Maximum parsimony (MP), and Maximum likelihood (ML) approaches implemented in PAUP [78] . The ME analysis for mtDNA consisted of NJ trees constructed from Kimura two-parameter distances followed by a branch-swapping procedure and for FIV Ple data employed the same parameter estimates as were used in the ML analysis. The MP analysis was conducted using a heuristic search, with random additions of taxa and tree-bisection-reconnection branch swapping. The ML analysis was done after selecting the best evolutionary model fitting the data using MODELTEST 3.7 [79] . Tree topologies reliability was assessed by 100 bootstraps. For the FIV Ple data, the reliability of the tree topology was further assessed through additional analyses using 520 bp of FIV Ple pol-RT sequences in a representative subset of individuals.

    Search related documents:
    Co phrase search for related documents
    • additional analysis and ML analysis: 1
    • evolutionary model and maximum likelihood: 1, 2, 3, 4, 5, 6, 7, 8, 9
    • evolutionary model and maximum parsimony: 1, 2, 3
    • evolutionary model and Minimum evolution: 1
    • evolutionary model and ML analysis: 1
    • evolutionary model and ML maximum likelihood: 1, 2, 3, 4
    • evolutionary model and MP maximum parsimony: 1
    • heuristic search and maximum likelihood: 1, 2, 3
    • maximum likelihood and Minimum evolution: 1, 2
    • maximum likelihood and ML analysis: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
    • maximum likelihood and ML maximum likelihood: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • maximum likelihood and ML maximum likelihood approach: 1, 2
    • maximum likelihood and MP maximum parsimony: 1, 2, 3, 4
    • maximum likelihood and NJ tree: 1, 2
    • maximum parsimony and Minimum evolution: 1, 2
    • maximum parsimony and ML maximum likelihood: 1, 2, 3
    • maximum parsimony and MP maximum parsimony: 1, 2, 3, 4, 5, 6
    • Minimum evolution and ML maximum likelihood: 1
    • Minimum evolution and MP maximum parsimony: 1