Author: Wang, Shiliang; Sundaram, Jaideep P; Spiro, David
Title: VIGOR, an annotation program for small viral genomes Document date: 2010_9_7
ID: 0lbxvudt_8
Snippet: Similarity searches between viral genomic sequences and a custom protein database are conducted by BLASTX [4] . The longest aligned region detected by the similarity search spanning one single protein sequence plus 100 bases upstream and downstream sequences is selected as the potential coding region for the particular open reading frame. This region is then further searched for genomic features indicative of the coding region......
Document: Similarity searches between viral genomic sequences and a custom protein database are conducted by BLASTX [4] . The longest aligned region detected by the similarity search spanning one single protein sequence plus 100 bases upstream and downstream sequences is selected as the potential coding region for the particular open reading frame. This region is then further searched for genomic features indicative of the coding region.
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