Selected article for: "blast output and taxonomic create"
Author: Oude Munnink, Bas B; Canuti, Marta; Deijs, Martin; de Vries, Michel; Jebbink, Maarten F; Rebers, Sjoerd; Molenkamp, Richard; van Hemert, Formijn J; Chung, Kevin; Cotten, Matthew; Snijders, Fransje; Sol, Cees JA; van der Hoek, Lia
Title: Unexplained diarrhoea in HIV-1 infected individuals
  • Document date: 2014_1_13
    • ID: 0e9l19kp_21
    Snippet: Primer, MID and ribosomal RNA sequences were trimmed or removed from the reads. Sequences were assembled with CodonCode Aligner software version 3.5.6. The consensus sequences (contigs) and the unassembled reads were compared with the available sequences in Genbank [37] via the BlastN tool using default settings [38] . The blast output was used to create a taxonomic classification of the reads with Megan software version 4.70.4 [39] . The followi.....
    Document: Primer, MID and ribosomal RNA sequences were trimmed or removed from the reads. Sequences were assembled with CodonCode Aligner software version 3.5.6. The consensus sequences (contigs) and the unassembled reads were compared with the available sequences in Genbank [37] via the BlastN tool using default settings [38] . The blast output was used to create a taxonomic classification of the reads with Megan software version 4.70.4 [39] . The following settings were used: Figure S1 represents a schematic overview of our analysis method.

    Search related documents:
    Co phrase search for related documents
    • analysis method and consensus sequence: 1, 2
    • analysis method and software version: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
    • available sequence and blastn tool: 1
    • available sequence and consensus sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
    • available sequence and software version: 1
    • available sequence and taxonomic classification: 1, 2
    • blastn tool and consensus sequence: 1, 2
    • consensus sequence and contigs consensus sequence: 1
    • consensus sequence and ribosomal RNA sequence: 1
    • default setting and software version: 1
    • default setting and taxonomic classification: 1