Author: Oude Munnink, Bas B; Canuti, Marta; Deijs, Martin; de Vries, Michel; Jebbink, Maarten F; Rebers, Sjoerd; Molenkamp, Richard; van Hemert, Formijn J; Chung, Kevin; Cotten, Matthew; Snijders, Fransje; Sol, Cees JA; van der Hoek, Lia
Title: Unexplained diarrhoea in HIV-1 infected individuals Document date: 2014_1_13
ID: 0e9l19kp_21
Snippet: Primer, MID and ribosomal RNA sequences were trimmed or removed from the reads. Sequences were assembled with CodonCode Aligner software version 3.5.6. The consensus sequences (contigs) and the unassembled reads were compared with the available sequences in Genbank [37] via the BlastN tool using default settings [38] . The blast output was used to create a taxonomic classification of the reads with Megan software version 4.70.4 [39] . The followi.....
Document: Primer, MID and ribosomal RNA sequences were trimmed or removed from the reads. Sequences were assembled with CodonCode Aligner software version 3.5.6. The consensus sequences (contigs) and the unassembled reads were compared with the available sequences in Genbank [37] via the BlastN tool using default settings [38] . The blast output was used to create a taxonomic classification of the reads with Megan software version 4.70.4 [39] . The following settings were used: Figure S1 represents a schematic overview of our analysis method.
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