Selected article for: "H1N1 population size and population size"
Author: de Silva, Eric; Ferguson, Neil M.; Fraser, Christophe
Title: Inferring pandemic growth rates from sequence data
  • Document date: 2012_8_7
    • ID: 1piyoafd_7
    Snippet: As an example, figure 1 shows a retrospective BSP generated using BEAST (for temporal frequency, see the electronic supplementary material, figure S1) of the effective population size of 2009 H1N1 derived from the 110 publically available complete haemagglutinin (HA) viral sequences (excluding duplicates) listed in the NCBI influenza virus resource [10] as arising from specimens collected in the USA over the period 7 April 2009 to 24 May 2009. Th.....
    Document: As an example, figure 1 shows a retrospective BSP generated using BEAST (for temporal frequency, see the electronic supplementary material, figure S1) of the effective population size of 2009 H1N1 derived from the 110 publically available complete haemagglutinin (HA) viral sequences (excluding duplicates) listed in the NCBI influenza virus resource [10] as arising from specimens collected in the USA over the period 7 April 2009 to 24 May 2009. This analysis covers a seven week period at the start of the pandemic, and thus extends the initial analyses presented in Fraser et al. [8] . Figure 1 shows a slowdown in the growth rate of the effective population size around late April/early May. If this reflects slowing growth in the number of infected individuals, then this would be of epidemiological interest-perhaps suggesting some impact of public health measures enacted in the USA at that time.

    Search related documents:
    Co phrase search for related documents
    • complete haemagglutinin and influenza virus: 1
    • effective population size and electronic supplementary material: 1, 2, 3
    • effective population size and growth rate: 1, 2, 3
    • effective population size and influenza virus: 1
    • effective population size growth rate and growth rate: 1
    • electronic supplementary material and growth rate: 1
    • electronic supplementary material and infected individual: 1, 2, 3
    • electronic supplementary material and influenza virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • electronic supplementary material and initial analysis: 1
    • epidemiological interest and growth rate: 1, 2
    • epidemiological interest and influenza virus: 1, 2
    • growth rate and infected individual: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24
    • growth rate and infected individual number: 1, 2, 3
    • growth rate and influenza virus: 1, 2, 3, 4, 5
    • growth rate and initial analysis: 1, 2, 3
    • HA viral sequence and influenza virus: 1
    • infected individual and influenza virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
    • infected individual number and influenza virus: 1, 2
    • influenza virus and initial analysis: 1