Author: Holman, Devin B.; Timsit, Edouard; Amat, Samat; Abbott, D. Wade; Buret, Andre G.; Alexander, Trevor W.
Title: The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot Document date: 2017_3_22
ID: 1nni3vhm_42
Snippet: We used PICRUSt to predict the functional composition of the NP microbiome based on 16S rRNA gene sequences. The gene content of the NP microbial community was then inferred and categorized into KOs, which are further classified into KEGG level 2 pathways. Overall, level 2 KEGG pathways associated with membrane transport, carbohydrate metabolism, and amino acid metabolism were the most relatively abundant in the NP microbiome of all cattle. Given.....
Document: We used PICRUSt to predict the functional composition of the NP microbiome based on 16S rRNA gene sequences. The gene content of the NP microbial community was then inferred and categorized into KOs, which are further classified into KEGG level 2 pathways. Overall, level 2 KEGG pathways associated with membrane transport, carbohydrate metabolism, and amino acid metabolism were the most relatively abundant in the NP microbiome of all cattle. Given that amino acids, carbohydrates, lipids, nucleic acids, and proteins are all found within the mucosa of the respiratory tract, it is reasonable to expect that pathways responsible for their metabolism would also be the most abundant in the microbiome [51] .
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