Author: Wang, Shiliang; Sundaram, Jaideep P; Spiro, David
Title: VIGOR, an annotation program for small viral genomes Document date: 2010_9_7
ID: 0lbxvudt_20
Snippet: (iii) The exon number must be the same as that of the homologous gene in the custom database. (iv) The translated product of the coding region must span 95% of the length of the homologous protein unless the homolog in the reference database is shorter than 50 amino acids except influenza genomes. For influenza genes, if the encoded protein is 500 amino acids or longer (PB2, PB1, PA and HA), the translated product must span more than 98% of the l.....
Document: (iii) The exon number must be the same as that of the homologous gene in the custom database. (iv) The translated product of the coding region must span 95% of the length of the homologous protein unless the homolog in the reference database is shorter than 50 amino acids except influenza genomes. For influenza genes, if the encoded protein is 500 amino acids or longer (PB2, PB1, PA and HA), the translated product must span more than 98% of the length of the reference protein; The length difference between the translated product and the reference protein should be within 5 amino acids for NS2 and M2 genes (shorter than 150 aa); the encoded NS, MP, NP and NA proteins should not be 15 amino acid shorter than reference proteins.
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