Selected article for: "SARS coronavirus and vigor prediction"
Author: Wang, Shiliang; Sundaram, Jaideep P; Spiro, David
Title: VIGOR, an annotation program for small viral genomes
  • Document date: 2010_9_7
    • ID: 0lbxvudt_49
    Snippet: VIGOR has also been used in the gene annotation and submission process. One of the advantages of VIGOR is that it can be used on large numbers of viral genomes simultaneously. The efficiency of VIGOR varies depending on the viral sequence type used as input. For example, using four hundred and fifty eight influenza genomes (6 Mb in total of nucleotide sequences) VIGOR took 85 minutes to complete the gene predictions. In comparison, it took VIGOR .....
    Document: VIGOR has also been used in the gene annotation and submission process. One of the advantages of VIGOR is that it can be used on large numbers of viral genomes simultaneously. The efficiency of VIGOR varies depending on the viral sequence type used as input. For example, using four hundred and fifty eight influenza genomes (6 Mb in total of nucleotide sequences) VIGOR took 85 minutes to complete the gene predictions. In comparison, it took VIGOR 23 minutes to execute the gene prediction for 102 SARS coronavirus genomes (3 Mb in total nucleotide sequences). Table 3 Comparison of the annotations in GenBank and predictions by VIGOR, GeneMarkS and ZCURVE_V of two SARS coronavirus genomes, NC_009695 (NC) and AY485277 (AY)

    Search related documents:
    Co phrase search for related documents
    • gene annotation and nucleotide sequence: 1, 2
    • gene annotation and prediction GenBank annotation: 1
    • gene annotation and SARS coronavirus: 1, 2, 3, 4, 5, 6
    • gene prediction and influenza genome: 1, 2, 3
    • gene prediction and large number: 1
    • gene prediction and prediction GenBank annotation: 1
    • gene prediction and SARS coronavirus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
    • gene prediction and sequence type: 1
    • influenza genome and nucleotide sequence: 1
    • influenza genome and SARS coronavirus: 1, 2, 3, 4, 5, 6, 7, 8
    • influenza genome and SARS coronavirus genome: 1
    • large number and nucleotide sequence: 1, 2, 3, 4, 5, 6, 7, 8
    • large number and SARS coronavirus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • large number and SARS coronavirus genome: 1, 2, 3, 4, 5
    • large number and sequence type: 1, 2, 3
    • large number and submission process: 1
    • nucleotide sequence and SARS coronavirus genome: 1, 2, 3, 4
    • nucleotide sequence and sequence type: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • nucleotide sequence and total nucleotide sequence: 1, 2