Author: Wang, Shiliang; Sundaram, Jaideep P; Spiro, David
Title: VIGOR, an annotation program for small viral genomes Document date: 2010_9_7
ID: 0lbxvudt_49
Snippet: VIGOR has also been used in the gene annotation and submission process. One of the advantages of VIGOR is that it can be used on large numbers of viral genomes simultaneously. The efficiency of VIGOR varies depending on the viral sequence type used as input. For example, using four hundred and fifty eight influenza genomes (6 Mb in total of nucleotide sequences) VIGOR took 85 minutes to complete the gene predictions. In comparison, it took VIGOR .....
Document: VIGOR has also been used in the gene annotation and submission process. One of the advantages of VIGOR is that it can be used on large numbers of viral genomes simultaneously. The efficiency of VIGOR varies depending on the viral sequence type used as input. For example, using four hundred and fifty eight influenza genomes (6 Mb in total of nucleotide sequences) VIGOR took 85 minutes to complete the gene predictions. In comparison, it took VIGOR 23 minutes to execute the gene prediction for 102 SARS coronavirus genomes (3 Mb in total nucleotide sequences). Table 3 Comparison of the annotations in GenBank and predictions by VIGOR, GeneMarkS and ZCURVE_V of two SARS coronavirus genomes, NC_009695 (NC) and AY485277 (AY)
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