Author: Garg, Anjali; Kumari, Bandana; Kumar, Ravindra; Kumar, Manish
Title: miPepBase: A Database of Experimentally Verified Peptides Involved in Molecular Mimicry Document date: 2017_10_23
ID: 06kffdm5_16
Snippet: Basic Local Alignment Search Tool (BLAST): It is incorporated to find homologous sequence(s) and similar peptide(s) present within miPepBase database. User has to simply paste the sequence in the text box or upload sequence in the FASTA file to find similar sequence(s). Option to specify search parameters like database, E-value cutoff and alignment scoring matrix value is also present. The default cut-off E-value is 100 and alignment-scoring matr.....
Document: Basic Local Alignment Search Tool (BLAST): It is incorporated to find homologous sequence(s) and similar peptide(s) present within miPepBase database. User has to simply paste the sequence in the text box or upload sequence in the FASTA file to find similar sequence(s). Option to specify search parameters like database, E-value cutoff and alignment scoring matrix value is also present. The default cut-off E-value is 100 and alignment-scoring matrix is BLOSUM62. In the miPepBase BLAST tool, four different types of databases namely Host protein, Host peptide, Pathogen protein, and Pathogen peptide are present. Hence, similarity search can be carried out against any of the four databases.
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