Author: Canuti, Marta; Eis-Huebinger, Anna Maria; Deijs, Martin; de Vries, Michel; Drexler, Jan Felix; Oppong, Samuel K.; Müller, Marcel A.; Klose, Stefan M.; Wellinghausen, Nele; Cottontail, Veronika M.; Kalko, Elisabeth K. V.; Drosten, Christian; van der Hoek, Lia
Title: Two Novel Parvoviruses in Frugivorous New and Old World Bats Document date: 2011_12_27
ID: 0ewu7e1c_37
Snippet: To identify conserved parts between Parvovirinae a Simplot analysis was performed. In the first putative ORF (nucleotides 84-1961 of Aj-BtPV-1, coding for a putative non structural protein NS1 of 625 aa) it was possible to identify a more conserved region of approx. 500 nucleotides. This region (nucleotides 835-1320 of Aj-BtPV-1 NS1 ORF) was then used to perform additional alignments and create further phylogenetic trees (both at nucleotide and a.....
Document: To identify conserved parts between Parvovirinae a Simplot analysis was performed. In the first putative ORF (nucleotides 84-1961 of Aj-BtPV-1, coding for a putative non structural protein NS1 of 625 aa) it was possible to identify a more conserved region of approx. 500 nucleotides. This region (nucleotides 835-1320 of Aj-BtPV-1 NS1 ORF) was then used to perform additional alignments and create further phylogenetic trees (both at nucleotide and amino acid level). The top identity percentages of Aj-BtPV-1 were found with Dependoviruses (between 53.4 and 59.6% at the amino acid level). However, all trees were consistent with the previous ones and Aj-BtPV-1 was still forming a separate lineage (branching autonomously from the others) confirming its independence from all the other known genera.
Search related documents:
Co phrase search for related documents- amino acid and identity percentage: 1, 2, 3, 4, 5, 6, 7, 8, 9
- amino acid and non structural protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41
- amino acid and phylogenetic tree: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76
- amino acid and previous one: 1, 2, 3
- amino acid and separate lineage: 1, 2, 3
- amino acid and Simplot analysis: 1, 2, 3, 4, 5
- amino acid and structural protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77
- amino acid level and phylogenetic tree: 1, 2, 3, 4
- amino acid level and structural protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
- amino acid nucleotide and non structural protein: 1, 2, 3
- amino acid nucleotide and phylogenetic tree: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29
- amino acid nucleotide and separate lineage: 1, 2
- amino acid nucleotide and structural protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- amino acid nucleotide level and phylogenetic tree: 1
- amino acid nucleotide level and structural protein: 1
Co phrase search for related documents, hyperlinks ordered by date