Author: Mordecai, Gideon J; Wilfert, Lena; Martin, Stephen J; Jones, Ian M; Schroeder, Declan C
Title: Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies Document date: 2015_11_17
ID: k2n6ropo_28
Snippet: Phylogenetic analysis showed the relationship of the novel type A and C variants from Devon to previously sequenced viruses (Figures 2 and 3) . The type A genome clustered with other type A variants, whereas Type C formed a distinct and separate branch, thereby confirming the originality and thus new master variant assignment of DWV Type C. Given that type A and C can recombine with each other, we screened for any genomes with evidence of recombi.....
Document: Phylogenetic analysis showed the relationship of the novel type A and C variants from Devon to previously sequenced viruses (Figures 2 and 3) . The type A genome clustered with other type A variants, whereas Type C formed a distinct and separate branch, thereby confirming the originality and thus new master variant assignment of DWV Type C. Given that type A and C can recombine with each other, we screened for any genomes with evidence of recombination and excluded them from the analysis in order to comply with the assumptions underlying phylogenetic reconstruction.
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