Author: Mordecai, Gideon J; Wilfert, Lena; Martin, Stephen J; Jones, Ian M; Schroeder, Declan C
Title: Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies Document date: 2015_11_17
ID: k2n6ropo_13
Snippet: Vicuna contigs 4200 bp in length were imported into Geneious (Version 7.04, created by Biomatters, Auckland, New Zealand) and the 'Map to Reference tool' was used to align the contigs with the DWV and VDV-1 reference genomes. For several of the samples the Vicuna assembly yielded full-length contigs that covered the whole genome, whereas for others consensus scaffolds were created from two or more contigs. The ends of the contigs were then trimme.....
Document: Vicuna contigs 4200 bp in length were imported into Geneious (Version 7.04, created by Biomatters, Auckland, New Zealand) and the 'Map to Reference tool' was used to align the contigs with the DWV and VDV-1 reference genomes. For several of the samples the Vicuna assembly yielded full-length contigs that covered the whole genome, whereas for others consensus scaffolds were created from two or more contigs. The ends of the contigs were then trimmed of any assembly or sequencing artefacts.
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